Are you designing a plant biology experiment? These are resources you may find useful.
A. Thaliana (arabidopsis thaliana, Thale Cress) is the small plant and research organism of choice for plant biologists.
- small genome (5 chr, 27k genes)
- first plant genome sequenced
- small size
- rapid lifecycle (6 weeks)
A. Thaliana Resources
TAIR (The Arabidopsis Information Resource) – this website is a database of arabidopsis molecular biology data. Check it out if you want to know the function of a specific gene or find a T-DNA insertion line.
TAIR BLAST – use this part of the TAIR website to check for flanking T-DNA insertions and primers for promoters.
ThaleMine – use this bioinformatic tool to check flanking regions to design promoters and check for promoter lengths. It also has a visualization tool to see where the gene of interest is expressed in the plant.